Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	728301	728464	164	2 [1]	[1] 2	USA300HOU_RS03535	hypothetical protein

TTGGATTTGCCTACGTCGGCATTGTAGTGGGCGCAGGATTTTCAACTGGACAAGAAGTTATGCAATTTTTCACTAAATATGGCTTGTGGGCTTATTTAGGTGTTATTATATCTGGTTTTATTTTAGCTTTTATTGGGCGCCAAGTAGCAAAAATTGGTACTGCCTTTGAAGCGACAAATCATGAATCAACATTACAATACGTATTCG  >  USA300TCH1516_ALE/728160‑728366                                                                                                                                             |                                                                   ttGGATTTGCCTACGTCGGCATTGTAGTGGGCGCAGGATTTTCAACTGGACAAGAAGTTATGCAATTTTTCACTAAATATGGCTTGTGGGCTTATTTAGGTGTTATTATATCTGGTTTTATTTTAGCTTTTATTGGGCGcc                                                                    >  2:61193/1‑141 (MQ=255)                                                                   ttttCACTAAATATGGCTTGTGGGCTTATTTAGGTGTTATTATATCTGGTTTTATTTTAGCTTTTATTGGGCGCCAAGTAGCAAAAATTGGTACTGCCTTTGAAGCGACAAATCATGAATCAACATTACAATACGTATTCg  <  1:61193/141‑1 (MQ=255)                                                                                                                                             |                                                                   TTGGATTTGCCTACGTCGGCATTGTAGTGGGCGCAGGATTTTCAACTGGACAAGAAGTTATGCAATTTTTCACTAAATATGGCTTGTGGGCTTATTTAGGTGTTATTATATCTGGTTTTATTTTAGCTTTTATTGGGCGCCAAGTAGCAAAAATTGGTACTGCCTTTGAAGCGACAAATCATGAATCAACATTACAATACGTATTCG  >  USA300TCH1516_ALE/728160‑728366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑