Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	728301	728464	164	2 [1]	[1] 2	USA300HOU_RS03535	hypothetical protein

TCTTCTTCTTATTTGGTATAGCTGTAACCATGATAGCTGGTGCAGGCGCAACATTTGAAGAAAGTTATAACATACCTACATGGCTAGGTGCTTTAATTATGACATTAGCGATTTATATTACGTTGCTATTAGACTTTAATAAAATAGTACGTGCACTAGGTATCGTTACACCATTTTTAATTGTTTTAGTTGTATTAATCGCT  >  USA300TCH1516_ALE/728403‑728605                                                               |                                                                                                                                             tcttcttctTATTTGGTATAGCTGTAACCATGATAGCTGGTGCAGGCGCAACATTTGAAGAAAGTTATAACATACCTACATGGCTAGGTGCTTTAATTATGACATTAGCGATTTATATTACGTTGCTATTAGACTTtaata                                                                <  2:20845/141‑1 (MQ=255)                                                               aGTTATAACATACCTACATGGCTAGGTGCTTTAATTATGACATTAGCGATTTATATTACGTTGCTATTAGACTTTAATAAAATAGTACGTGCACTAGGTATCGTTACACCATTTTTAATTGTTTTAGTTGTATTAATCGCt  >  2:26040/1‑141 (MQ=255)                                                               |                                                                                                                                             TCTTCTTCTTATTTGGTATAGCTGTAACCATGATAGCTGGTGCAGGCGCAACATTTGAAGAAAGTTATAACATACCTACATGGCTAGGTGCTTTAATTATGACATTAGCGATTTATATTACGTTGCTATTAGACTTTAATAAAATAGTACGTGCACTAGGTATCGTTACACCATTTTTAATTGTTTTAGTTGTATTAATCGCT  >  USA300TCH1516_ALE/728403‑728605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑