Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	844619	844755	137	2 [1]	[1] 2	lgt	Prolipoprotein diacylglyceryl transferase

ATATGGCATGGTGGAATAGCAATACATGGTGGTTTAATAGGTGGCTTTATTGCTGGTGTTATTGTATGTAAAGTGAAAAATTTAAACCCATTTCAAATTGGTGATATCGTTGCGCCAAGTATAATTTTAGCGCAAGGAATTGGACGCTGGGGTAACTTTATGAATCACGAGGCACATGGTGGATCGGTGTCACGCGCTTTTTTAGAAC  >  USA300TCH1516_ALE/844478‑844685                                                                                                                                             |                                                                    atatGGCATGGTGGAATAGCAATACATGGTGGTTTAATAGGTGGCTTTATTGCTGGTGTTATTGTATGTAAAGTGAAAAATTTAAACCCATTTCAAATTGGTGATATCGTTGCGCCAAGTATAATTTTAGCGCAAGGAAtt                                                                     <  2:25302/141‑1 (MQ=255)                                                                    gtaAAGTGAAAAATTTAAACCCATTTCAAATTGGTGATATCGTTGCGCCAAGTATAATTTTAGCGCAAGGAATTGGACGCTGGGGTAACTTTATGAATCACGAGGCACATGGTGGATCGGTGTCACGCGCTTTTTTAGAAc  >  1:48498/1‑141 (MQ=255)                                                                                                                                             |                                                                    ATATGGCATGGTGGAATAGCAATACATGGTGGTTTAATAGGTGGCTTTATTGCTGGTGTTATTGTATGTAAAGTGAAAAATTTAAACCCATTTCAAATTGGTGATATCGTTGCGCCAAGTATAATTTTAGCGCAAGGAATTGGACGCTGGGGTAACTTTATGAATCACGAGGCACATGGTGGATCGGTGTCACGCGCTTTTTTAGAAC  >  USA300TCH1516_ALE/844478‑844685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑