Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	857747	857918	172	2 [1]	[1] 2	gapA1	Glyceraldehyde‑3‑phosphate dehydrogenase 1

TAAAGCACAAGCTCATATTGAAGCAGGCGCTAAAAAAGTATTAATCTCAGCACCAGCTACTGGTGACTTAAAAACAATCGTATTCAACACTAACCACCAAGAGTTAGACGGTTCTGAAACAGTTGTTTCAGGTGCTTCATGTACTACAAACTCATTAGCACCAGTTGCTAAAGTT  >  USA300TCH1516_ALE/857606‑857780                                                                                                                                             |                                   taaagCACAAGCTCATATTGAAGCAGGCGCTAAAAAAGTATTAATCTCAGCACCAGCTACTGGTGACTTAAAAACAATCGTATTCAACACTAACCACCAAGAGTTAGACGGTTCTGAAACAGTTGTTTCAGGTGCTTCATg                                    <  2:7829/141‑1 (MQ=255)                                   aaaGTATTAATCTCAGCACCAGCTACTGGTGACTTAAAAACAATCGTATTCAACACTAACCACCAAGAGTTAGACGGTTCTGAAACAGTTGTTTCAGGTGATTCATGTACTACAAACTCATTAGCACCAGTTGCTAAAGtt  <  2:39056/141‑1 (MQ=255)                                                                                                                                             |                                   TAAAGCACAAGCTCATATTGAAGCAGGCGCTAAAAAAGTATTAATCTCAGCACCAGCTACTGGTGACTTAAAAACAATCGTATTCAACACTAACCACCAAGAGTTAGACGGTTCTGAAACAGTTGTTTCAGGTGCTTCATGTACTACAAACTCATTAGCACCAGTTGCTAAAGTT  >  USA300TCH1516_ALE/857606‑857780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑