Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	857747	857918	172	2 [1]	[1] 2	gapA1	Glyceraldehyde‑3‑phosphate dehydrogenase 1

CGCTTACACAGGTGATCAAAATACACAAGACGCACCTCACAGAAAAGGTGACAAACGTCGTGCTCGTGCAGCGGCAGAAAACATCATCCCTAACTCAACAGGTGCTGCTAAAGCTATCGGTAAAGTTATTCCTGAAATCGATGGTAAATTAGATGGTGGTGCACAACGTGTTCCTGTAGCTACAGGTTCATTAACTGAATTAACAGTAGTATTAGAAAAACAAGACGTAACA  >  USA300TCH1516_ALE/857828‑858059                                                                                            |                                                                                                                                             cGCTTACACAGGTGATCAAAATACACAAGACGCACCTCACAGAAAAGGTGATAAACGTCGTGCTCGTGCAGCGGCAGAAAACATCATCCCTAACTCAACAGGTGCTGCTAAAGCTATCGGTAAAGTTATTCCTGAAATCGa                                                                                             >  1:23843/1‑141 (MQ=255)                                                                                            aaCTCAACAGGTGCTGCTAAAGCTATCGGTAAAGTTATTCCTGAAAGCGATGGTAAATTAGATGGTGGTGCACAACGTGTTCCTGTAGCTACAGGTTCATTAACTGAATTAACAGTAGTATTAGAAAAACAAGACGTAACa  >  1:37142/1‑141 (MQ=255)                                                                                            |                                                                                                                                             CGCTTACACAGGTGATCAAAATACACAAGACGCACCTCACAGAAAAGGTGACAAACGTCGTGCTCGTGCAGCGGCAGAAAACATCATCCCTAACTCAACAGGTGCTGCTAAAGCTATCGGTAAAGTTATTCCTGAAATCGATGGTAAATTAGATGGTGGTGCACAACGTGTTCCTGTAGCTACAGGTTCATTAACTGAATTAACAGTAGTATTAGAAAAACAAGACGTAACA  >  USA300TCH1516_ALE/857828‑858059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑