Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	858093	858169	77	2 [1]	[1] 2	gapA1	Glyceraldehyde‑3‑phosphate dehydrogenase 1

GTTATTCCTGAAATCGATGGTAAATTAGATGGTGGTGCACAACGTGTTCCTGTAGCTACAGGTTCATTAACTGAATTAACAGTAGTATTAGAAAAACAAGACGTAACAGTTGAACAAGTTAACGAAGCTATGAAAAATGCTTCAAACGAATCATTCGGTTACACTGAAGACGA  >  USA300TCH1516_ALE/857952‑858124                                                                                                                                             |                                 gTTATTCCTGAAATCGATGGTAAATTAGATGGTGGTGCACAACGTGTTCCTGTAGCTACAGGTTCATTAACTGAATTAACAGTAGTATTAGAAAAACAAGACGTAACAGTTGAACAAGTTAACGAAGCTATGAAGAATGCt                                  <  2:23843/141‑1 (MQ=255)                                 tggagCACAACGTGTTCCTGTAGCTACAGGTTGATAAACTGAATTAACAATAGTATTAGAAAAACAAGACGTAACAGTTGAACAAGTTAACGACGCTATGAAAAATGCTTCAAACGAATCATGCGGTTACACTGAAGACGa  >  2:63459/1‑141 (MQ=255)                                                                                                                                             |                                 GTTATTCCTGAAATCGATGGTAAATTAGATGGTGGTGCACAACGTGTTCCTGTAGCTACAGGTTCATTAACTGAATTAACAGTAGTATTAGAAAAACAAGACGTAACAGTTGAACAAGTTAACGAAGCTATGAAAAATGCTTCAAACGAATCATTCGGTTACACTGAAGACGA  >  USA300TCH1516_ALE/857952‑858124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑