Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	858093	858169	77	2 [1]	[1] 2	gapA1	Glyceraldehyde‑3‑phosphate dehydrogenase 1

CAGACGTTGTAGGTATGACTTACGGTTCATTATTCGACGCTACACAAACTCGTGTAATGTCAGTTGGCGACCGTCAATTAGTTAAAGTTGCAGCTTGGTATGATAACGAAATGTCATATACTGCACAATTAGTTCGTACATTAGCATACTTAGCTGAACTTTCTAAATAATTTTA  >  USA300TCH1516_ALE/858136‑858310                                   |                                                                                                                                             cAGACGTTGTAGGTATGACTTACGGTTCATTATTCGACGCTACACAAACTCGTGTAATGTCAGTTGGCGACCGTCAATTAGTTAAAGTTGCAGCTTGGTATGATAACGAAATGTCATATACTGCACAATTAGTTCGTACAt                                    <  1:35300/141‑1 (MQ=255)                                   cGACGCTACACAAACTCGTGTAATGTCAGTTGGCGACCGTCAATTAGTTAAAGTTGCCGCTTGGTATGATAACGAAATGTCATATACTGCACAATTAGTTCGTACATTGGCATACTTAGCTGAACTTTCTAAATAAtttga  >  1:49227/1‑139 (MQ=255)                                   |                                                                                                                                             CAGACGTTGTAGGTATGACTTACGGTTCATTATTCGACGCTACACAAACTCGTGTAATGTCAGTTGGCGACCGTCAATTAGTTAAAGTTGCAGCTTGGTATGATAACGAAATGTCATATACTGCACAATTAGTTCGTACATTAGCATACTTAGCTGAACTTTCTAAATAATTTTA  >  USA300TCH1516_ALE/858136‑858310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑