Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	897087	897184	98	2 [1]	[1] 2	[Int‑Tn_1]	[Int‑Tn_1]

ATGGAAAGTTAGTGACTTAAGTGTAGTAGGTTTCTTATCATTCAGTTTTTCTTCTATACGCTCATTTAAGAGTCTTTGAGCTTCTTTTTGTGATTGCTTACCATTCTTATTAAGTACCACGCTAACACGTCTCCATTTGGCAGTGAGAGGGTCTTTG  >  USA300TCH1516_ALE/896946‑897102                                                                                                                                             |                 aTGGAAAGTTAGTGACTTAAGTGTAGTAGGTTTCTTATCATTCAGTTTTTCTTCTATACGCTCATTTAAGAGTCTTTGAGCTTCTTTTTGTGATTGCTTACCATTCTTATTAAGTACCACGCTAACACGTCTCCATTTGGc                  <  2:7470/141‑1 (MQ=255)                 ttAAGTGTAGTAGGTTTCTTATCATTCAGTTTTTCTTCTATACGCTCATTTAAGAGTCTTTGAGCTTCTTTTTGTGATTGCTTACCATTCTTATTAAGTACCACGCTAACACGTCTCCATTTGGCAGTGAGTGGGTCTTTg  <  1:57069/141‑1 (MQ=255)                                                                                                                                             |                 ATGGAAAGTTAGTGACTTAAGTGTAGTAGGTTTCTTATCATTCAGTTTTTCTTCTATACGCTCATTTAAGAGTCTTTGAGCTTCTTTTTGTGATTGCTTACCATTCTTATTAAGTACCACGCTAACACGTCTCCATTTGGCAGTGAGAGGGTCTTTG  >  USA300TCH1516_ALE/896946‑897102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑