Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	897087	897184	98	2 [1]	[1] 2	[Int‑Tn_1]	[Int‑Tn_1]

AATATCTATATTTAGTTTCTTTATTCTTATTTTTAAATTTTTCTAACCACATTTTGCTTCTCCCTCCTCAAAATTGGCAAAAAATAATAAGGGTAGGCATGCTACCCGGAAAATAATGATTATGACATAATTAATAGATTTATATCGTTTCTTTATAAGAAATATCGACATCCAAATGGAATTTCTCAGACTCTACAGTTTTATTGTCTTCGT  >  USA300TCH1516_ALE/897113‑897325                                                                         |                                                                                                                                             aaTATCTATATTTAGTTTCTTTATTCTTATTTTTAAATTTTTCTAACCACATTTTGCTTCTCCCTCCTCAAAATTGGCAAAAAATAATAAGGGTAGGCATAGTCCCCGGAACATATTTAGAATGACATAATTAATAGAttt                                                                          >  1:45211/1‑141 (MQ=38)                                                                         aTTGGCAAAAAATAATAAGGGTAGGCATGCTACCCGGAAAATAATGATTATGACATAATTAATAGATTTATATCGTTTCTTTATAAGAAATATCGACATCCAAATGGAATTTCTCAGACTCTACAGTTTTATTGTCTTCGt  >  1:50201/1‑141 (MQ=255)                                                                         |                                                                                                                                             AATATCTATATTTAGTTTCTTTATTCTTATTTTTAAATTTTTCTAACCACATTTTGCTTCTCCCTCCTCAAAATTGGCAAAAAATAATAAGGGTAGGCATGCTACCCGGAAAATAATGATTATGACATAATTAATAGATTTATATCGTTTCTTTATAAGAAATATCGACATCCAAATGGAATTTCTCAGACTCTACAGTTTTATTGTCTTCGT  >  USA300TCH1516_ALE/897113‑897325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑