Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	959613	959671	59	2 [1]	[1] 2	pgi	Glucose‑6‑phosphate isomerase

AGAAAAAGGTGCTTTAAAACAGTTGGCTACAAACGAAGGTTATGAAACGTTTATCGTACCTGATGATGTAGGTGGAAGATATTCTGTTTTAACAGCAGTAGGATTATTACCAATTGCAACAGCTGGAATTAACATCGAAGCTATGATGATTGGTGCTGCAAAAGCACGTGAAGAATTATCTTCAGATA  >  USA300TCH1516_ALE/959472‑959659                                                                                                                                             |                                                aGAAAAAGGTGCTTTAAAACAGTTGGCTACAAACGAAGGTTATGAAACGTTTATCGTACCTGATGATGTAGGTGGAAGATATTCTGTTTTAACAGCAGTAGGATTATTACCAATTGCAACAGCTGGAATTAACATCGAAGc                                                 <  2:44870/141‑1 (MQ=255)                                                ggTTTATCGTACCTGATGATGTAGGTGGAAGATATTCTGTTTTACCAGCAGAAGGAATATTGCAAATTGCAACCGACAGAATTCACATCAAAGCTATGATGAATGGTGCTGCACAAGCACGTGAAGACTTATCATCAGAtc  >  2:6637/2‑140 (MQ=255)                                                                                                                                             |                                                AGAAAAAGGTGCTTTAAAACAGTTGGCTACAAACGAAGGTTATGAAACGTTTATCGTACCTGATGATGTAGGTGGAAGATATTCTGTTTTAACAGCAGTAGGATTATTACCAATTGCAACAGCTGGAATTAACATCGAAGCTATGATGATTGGTGCTGCAAAAGCACGTGAAGAATTATCTTCAGATA  >  USA300TCH1516_ALE/959472‑959659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑