Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	959613	959671	59	2 [1]	[1] 2	pgi	Glucose‑6‑phosphate isomerase

AATTAGAAGAAAACATTGCATACCAATATGCGACAATTCGAAACATTTTATATGCAAAAGGTTATACAACAGAAATGTTGATTAACTATGAACCATCTATGCAATACTTTAATGAATGGTGGAAACAATTATTTGGTGAATCAGAAGGTAAAG  >  USA300TCH1516_ALE/959660‑959812             |                                                                                                                                             aaTTAGAAGAAAACATTGCATACCAATATGCGACAATTCGAAACATTTTATATGCAAAAGGTTATACAACAGAAATGTTGATTAACTATGAACCATCTATGCAATACTTTAATGAATGGTGGAAACAATTATTTGGTGAAt              >  1:15063/1‑141 (MQ=255)             aCATTGCATACCAATATGCGACAATTCGAAACATCTTATATGCAAAAGGTTATACAACAGAAATGTTGATTAACTATGAACCATCTATGCAATACTTTAATGAATGGTGGAAACAATTATTTGGTGAATCAGAAGGTAAAg  <  1:60007/141‑1 (MQ=255)             |                                                                                                                                             AATTAGAAGAAAACATTGCATACCAATATGCGACAATTCGAAACATTTTATATGCAAAAGGTTATACAACAGAAATGTTGATTAACTATGAACCATCTATGCAATACTTTAATGAATGGTGGAAACAATTATTTGGTGAATCAGAAGGTAAAG  >  USA300TCH1516_ALE/959660‑959812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑