Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	960201	960299	99	2 [1]	[1] 2	[pgi]	[pgi]

TGTTCCTAACATGGTAGTGAACATTCCACAATTAGATGAAGAAACTTTCGGTTACGTCGTATACTTCTTCGAACTTGCTTGTGCAATGAGTGGATACCAATTAGGCGTAAATCCATTTAACCAACCTGGTGTAGAAGCATATAAACAAAACATGTTCG  >  USA300TCH1516_ALE/960060‑960217                                                                                                                                             |                  tgtTCCTAACATGGTAGTGAACATTCCACAATTAGATGAAGAAACTTTCGGTTACGTCGTATACTTCTTCGAACTTGCTTGTGCAATGAGTGGATACCAATTAGGCGTAAATCCATTTAACCAACCTGGTGTAGAAGCata                   >  2:53948/1‑141 (MQ=255)                  tGAACATTCCACAATTAGATGAAGAAACTTTCGGTTACGTCGTATACTTCTTCGAACTTGCTTGTGCAATGAGTGGATACCAATTAGGCGTAAATCCATTTAACCAACCTGGTGTAGAAGCATATAAACAAAACATGTTCg  <  1:41991/141‑1 (MQ=255)                                                                                                                                             |                  TGTTCCTAACATGGTAGTGAACATTCCACAATTAGATGAAGAAACTTTCGGTTACGTCGTATACTTCTTCGAACTTGCTTGTGCAATGAGTGGATACCAATTAGGCGTAAATCCATTTAACCAACCTGGTGTAGAAGCATATAAACAAAACATGTTCG  >  USA300TCH1516_ALE/960060‑960217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑