Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	960201	960299	99	2 [1]	[1] 2	[pgi]	[pgi]

TAAACCTGGTTTTGAAGACTTGAAAAAAGAATTAGAAGAACGTTTATAAAATACATTACTTCAAAGATTAGTGAAGTTTGAAAAGATAGAACTAGACGTTAACTATTTAAAGCATATTTTCGAGGTTGTCATTACAAATGTAAAAATGTAATGACAACCTCGTTTTTATTTATATGCAAGAACTAGGTTACTAGCTAATGTGACAAGATGTTA  >  USA300TCH1516_ALE/960228‑960440                                                                         |                                                                                                                                             tAAACCTGGTTTTGACGACTTGAAAAAAGAATTAGAAGAACGTTTATAAAATACATTACTTCAAAGATTAGTGAAGTTTGAAAAGATAGAACTAGACGTTAACTATTTAAAGCATATTTTCGAGGTTGTCATTACaaatgt                                                                          <  1:53948/141‑1 (MQ=255)                                                                         gAAGTTTGAAAAGATAGAACTAGACGTTAACTATTTAAAGCATATTTTCGAGGTTGTCATTACAAATGTAAAAATGTAATGACAACCTCGTTTTTATTTATATGCAAGAACTAGGTTACTAGCTAATGTGACAAGATGTTa  >  1:61610/1‑141 (MQ=255)                                                                         |                                                                                                                                             TAAACCTGGTTTTGAAGACTTGAAAAAAGAATTAGAAGAACGTTTATAAAATACATTACTTCAAAGATTAGTGAAGTTTGAAAAGATAGAACTAGACGTTAACTATTTAAAGCATATTTTCGAGGTTGTCATTACAAATGTAAAAATGTAATGACAACCTCGTTTTTATTTATATGCAAGAACTAGGTTACTAGCTAATGTGACAAGATGTTA  >  USA300TCH1516_ALE/960228‑960440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑