Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	995112	995301	190	2 [1]	[1] 2	appA	Oligopeptide‑binding protein AppA

AGTGAGACCAAAATATGAAGACAAAGAATTACGTAAAGCAATGCTTTATGCAATTGATAGAGAAAAATGGATCAAAGCGTTTTTCAATGGTTACGCTAGTGAAATCAATAGTTTTGTACCATCTATGCATTGGATAGCAGCCAATCCTAAGGACCTAAATGATTACAAATATGATCCTGAAAAAGCTAAAAAAATCTTAGATAAGTTA  >  USA300TCH1516_ALE/994973‑995180                                                                                                                                           |                                                                      aatGAGACCAAAATATGAAGAAAAAGAATTACGTAAAGCAATGCTTTATGCAATTGATAGAGAAAAATGGATCAAAGCGTTTTTCAATGGTTACGCTAGTGAAATCAATAGTTTTGTACCATCTATGCATTGGATagcatc                                                                     <  2:28984/139‑3 (MQ=255)                                                                    tGGATCAAAGCGTTTTTCAATGGTTACGCTAGTGAAATCAATAGTTTTGTACCATCTATGCATTGGATAGCAGCCAATCCTAAGGACCTAAATGATTACAAATATGATCCTGAAAAAGCTAAAAAAATCTTAGATAAGTTa  >  2:821/1‑141 (MQ=255)                                                                                                                                           |                                                                      AGTGAGACCAAAATATGAAGACAAAGAATTACGTAAAGCAATGCTTTATGCAATTGATAGAGAAAAATGGATCAAAGCGTTTTTCAATGGTTACGCTAGTGAAATCAATAGTTTTGTACCATCTATGCATTGGATAGCAGCCAATCCTAAGGACCTAAATGATTACAAATATGATCCTGAAAAAGCTAAAAAAATCTTAGATAAGTTA  >  USA300TCH1516_ALE/994973‑995180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑