Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	995112	995301	190	2 [1]	[1] 2	appA	Oligopeptide‑binding protein AppA

CGGATTTAGAGAAGATCCTAAAGGTAATAAATTTGAGATTAACTTTAAACATTATTCAGGTTCTAATCCTACTTTTGAACCAAGAACTGCTGCGATAAAAGATTTCTGGGAAAAAGTTGGCTTGAAAACAAATGTGAAGTTAGTAGAATTCGGTAAATATAATGAAGACTTAGCAAATGCATCTAAAGATATGGAAGTGTACTTCAGATCATGGGCAGGAGGTACAGATCCAGATCCAT  >  USA300TCH1516_ALE/995204‑995442                                                                                                   |                                                                                                                                             cGGATTTAGAGAAGATCCTAAAGGTAATAAATTTGAGATTAACTTTAAACATTATTCAGGTTCTAATCCTACTTTTGAACCAAGAACTGCTGCGATAAAAGATTTCTGGGAAAAAGTTGGCTTGAAAACAAATGTGAAGtt                                                                                                    <  1:821/141‑1 (MQ=255)                                                                                                   aaGATTTCTGGGAAAAAGTTGGCTTGAAAACAAATGTGAAGTTAGTAGAATTCGGTAAATATAATGAAGACTTAGCAAATGCATCTAAAGATATGGAAGTGTACTTCAGATCATGGGCAGGAGGTACAGATCCAGATCCAt  >  1:43577/1‑141 (MQ=255)                                                                                                   |                                                                                                                                             CGGATTTAGAGAAGATCCTAAAGGTAATAAATTTGAGATTAACTTTAAACATTATTCAGGTTCTAATCCTACTTTTGAACCAAGAACTGCTGCGATAAAAGATTTCTGGGAAAAAGTTGGCTTGAAAACAAATGTGAAGTTAGTAGAATTCGGTAAATATAATGAAGACTTAGCAAATGCATCTAAAGATATGGAAGTGTACTTCAGATCATGGGCAGGAGGTACAGATCCAGATCCAT  >  USA300TCH1516_ALE/995204‑995442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑