Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1012746	1012837	92	2 [1]	[1] 2	gerN	Na(+)/H(+)‑K(+) antiporter GerN

TCATATATTTTAGGTGTTCAATTTAAAAGAATGTCATTTTTACAAAAATTGATGGATGGTACGACGCAAATCGGTATTCGTGCGGTATTTGCATTAATAATATTATTAGTAGCCCTAGCAGAGGGAGTTGGCGCAGAAAATATATTAGGTGCATTCTTAG  >  USA300TCH1516_ALE/1012605‑1012764                                                                                                                                             |                    tCATATATTTTAGGTGTTCAATTTAAAAGAATGTAATTTTTACAAAAATTGATGGATGGTACGACGCAAATCGGTATTCGTGCGGTATTTGCATTAATAATATTATTAGTAGCCCTAGCAGAGGGAGTTGGCGCAGAAAat                     <  2:61256/141‑1 (MQ=255)                    aaTTTAAAAGAATGTCATTTTTACAAAAATTGATGGATGGTACGACGCAAATCGGTATTCGTGCGGTATTTGCATTAATAATATTATTAGTAGCCCTAGCAGAGGGAGTTGGCGCAGAAAATATATTAGGTGCATTCTTAg  <  2:21474/141‑1 (MQ=255)                                                                                                                                             |                    TCATATATTTTAGGTGTTCAATTTAAAAGAATGTCATTTTTACAAAAATTGATGGATGGTACGACGCAAATCGGTATTCGTGCGGTATTTGCATTAATAATATTATTAGTAGCCCTAGCAGAGGGAGTTGGCGCAGAAAATATATTAGGTGCATTCTTAG  >  USA300TCH1516_ALE/1012605‑1012764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑