Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1016718	1016760	43	2 [1]	[1] 2	acp	Sodium/proton‑dependent alanine carrier protein

TTACTGGTGTGCTATTTACATTGCGTATGCGATTTTTTCAAGTTAGACATTTTAAAGAAATGATTCGATTAATGTTTCAAGGAGAGAAGTCTCCTAATGGTATTTCAAGTTTTCAAGCGATAGCCATGTCTTTAGCAGGCAGGG  >  USA300TCH1516_ALE/1016577‑1016720                                                                                                                                             |    ttACTGGTGTGCTATTTACATTGCGTATGCGATTTTTTCAAGTTAGACATTTTAAAGAAATGATTCGATTAATGTTTCAAGGAGAGAAGTCTCCTAATGGTATTTCAAGTTTTCAAGCGATAGCCATGTCTTTAgcaggca     <  1:43903/141‑1 (MQ=255)    cTGGTGTGCTATTTACATTGCGTATGCGATTTTTTCAAGTTAGACATTTTAAAGAAATGATTCGATTAATGTTTCAAGGAGAGAAGTCTCCTAATGGTATTTCAAGTTTTCAAGCGATAGCCATGTCTTTAGCAGGCAggg  <  1:58253/141‑1 (MQ=255)                                                                                                                                             |    TTACTGGTGTGCTATTTACATTGCGTATGCGATTTTTTCAAGTTAGACATTTTAAAGAAATGATTCGATTAATGTTTCAAGGAGAGAAGTCTCCTAATGGTATTTCAAGTTTTCAAGCGATAGCCATGTCTTTAGCAGGCAGGG  >  USA300TCH1516_ALE/1016577‑1016720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑