Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1016718	1016760	43	2 [1]	[1] 2	acp	Sodium/proton‑dependent alanine carrier protein

TTATAGGAGGACCTGGTGCAGTATTTTGGATGTGGATTACTGCGTTTTTAGGTGCAAGTAGTGCTTTTATTGAATCTACACTTGGTCAAATATTCAAGAGAGTTGAAAATAATGAATACCGTGGTGGACCAGCGTATTATAT  >  USA300TCH1516_ALE/1016760‑1016901  |                                                                                                                                             ttATAGGAGGACCTGGTGCAGTATTTTGGATGTGGATTACTGCGTTTTTAGGTGCAAGTAGTGCTTTTATTGAATCTACACTTGGTCAAATATTCAAGAGAGTTGAAAATAATGAATACCGTGGTGGACCAGCGTATtata   >  1:39637/1‑141 (MQ=255)  tataGGAGGACCTGGTGCAGTATTTTGGATGTGGATTACTGCGTTTTTAGGTGCAAGTAGTGCTTTTATTGAATCTACACTTGGTCAAATATTCAAGAGAGTTGAAAATAATGAATACCGTGGTGGACCAGCGTATTatat  <  2:10120/141‑1 (MQ=255)  |                                                                                                                                             TTATAGGAGGACCTGGTGCAGTATTTTGGATGTGGATTACTGCGTTTTTAGGTGCAAGTAGTGCTTTTATTGAATCTACACTTGGTCAAATATTCAAGAGAGTTGAAAATAATGAATACCGTGGTGGACCAGCGTATTATAT  >  USA300TCH1516_ALE/1016760‑1016901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑