Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1038631	1038686	56	2 [1]	[1] 2	USA300TCH1516_00964	hypothetical protein

TAGTGAAGCAGAAAATAATGCGATTTTATTCAAACCAAAGGGTGACTCCGTTGACAATGACAACTTTTCGCCTGATGAGGGGAATGTAATATTAGTAAATAATCAGTTCTGGTCGATTTATTACAAGCAGTTTCAACCTGATA  >  USA300TCH1516_ALE/1038490‑1038632                                                                                                                                             |   caGTGAAGCAGAAAATAATGCGATTTTATTCAAACCAAAGGGTGACTCCGTTGACAATGACAACTTTTCGCCTGATGAGGGGAATGTAATATTAGTAAATAATCAGTTCTGGTCGATTTATTACAAGCAGTTTCAACCTGa    <  2:10941/140‑1 (MQ=255)   gTGAAGCAGAAAATAATGCGATTTTATTCAAACCAAAGGGTGACTCCGTTGACAATGACAACTTTTCGCCTGATGAGGGGAATGTAATATTAGTAAATAATCAGTTCTGGTCGATTTATTACAAGCAGTTTCAACCTGata  >  2:43709/1‑141 (MQ=255)                                                                                                                                             |   TAGTGAAGCAGAAAATAATGCGATTTTATTCAAACCAAAGGGTGACTCCGTTGACAATGACAACTTTTCGCCTGATGAGGGGAATGTAATATTAGTAAATAATCAGTTCTGGTCGATTTATTACAAGCAGTTTCAACCTGATA  >  USA300TCH1516_ALE/1038490‑1038632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑