Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1038631	1038686	56	2 [1]	[1] 2	USA300TCH1516_00964	hypothetical protein

CCGATAAAAAATCAAAAAAATAATGTCGAAGTAATTATTCCACAAAAGTTTCATGCAATGCGTAATGAAATCAATCAAGCATATCATTCATGGTTTGAATTTGTACAAAATAAAAATAATAAAGAGAATAAGTTATCTATACAGTTTATCAACAAAAATGATTGTCGAATTTTTTCATTTGATGCACGAGATA  >  USA300TCH1516_ALE/1038635‑1038827                                                     |                                                                                                                                             ccGATAAAAAATCAAAAAAATAATGTCGAAGTAATTATTCCACAAAAGTTTCATGCAATGCGTAATGAAATCAATCAAGCATATCATTCATGGTTTGAATTTGTACAAAATAAAAATAATAAAGAGAATAAGTTATCtata                                                      >  2:4204/1‑141 (MQ=255)                                                     aTGCAATGCGTAATGAAATCAATCAAGCATATCATTCATGGTTTGAATTTGTACAAAATAAAAATAATAAAGAGAATAAGTTATCTATACAGTTTATCAACAAAAATGATTGTCGAATTTTTTCATTTTATGCACGAGATa  >  1:42530/1‑141 (MQ=255)                                                     |                                                                                                                                             CCGATAAAAAATCAAAAAAATAATGTCGAAGTAATTATTCCACAAAAGTTTCATGCAATGCGTAATGAAATCAATCAAGCATATCATTCATGGTTTGAATTTGTACAAAATAAAAATAATAAAGAGAATAAGTTATCTATACAGTTTATCAACAAAAATGATTGTCGAATTTTTTCATTTGATGCACGAGATA  >  USA300TCH1516_ALE/1038635‑1038827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑