Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1089822	1089872	51	2 [1]	[1] 2	[USA300HOU_RS05380]	[USA300HOU_RS05380]

ATTTACAATTATTTATGGGGAGCATTTTATTCTTTAAATTGTTAACGGAATTTATAAATATAATGATTCATGGACTATTACTTTCAGTGTTCATTACGCCAACATTACTATTAATGTTATTGGCAATCATCATTTCTTATTCGTTACAATTACGAGAGCGACCATAATTAAAAGC  >  USA300TCH1516_ALE/1089681‑1089855                                                                                                                                             |                                   attTACAATTATTTATGGGGAGCATTTTATTCTTTAAATTGTTAACGGAATTTATAAATATAATGATTCATGGACTATTACTTTCAGTGTTCATTACGCCAACATTACTATTAATGTTATTGGCAATCATCATTTCTTAtt                                    >  1:9620/1‑141 (MQ=255)                                   tAAATTGTTAACGGAATTTATAAATATAATGATTCATGGACTATTACTTTCAGTGTTCATTACGCCAACATTACTATTAATGTTATTGGCAATCATCATTTCTTATTCGTTACAATTACGAGAGCGACCATAATTAAAAGc  <  1:49225/141‑1 (MQ=255)                                                                                                                                             |                                   ATTTACAATTATTTATGGGGAGCATTTTATTCTTTAAATTGTTAACGGAATTTATAAATATAATGATTCATGGACTATTACTTTCAGTGTTCATTACGCCAACATTACTATTAATGTTATTGGCAATCATCATTTCTTATTCGTTACAATTACGAGAGCGACCATAATTAAAAGC  >  USA300TCH1516_ALE/1089681‑1089855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑