Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1089822	1089872	51	2 [1]	[1] 2	[USA300HOU_RS05380]	[USA300HOU_RS05380]

AAAGTACTATCTATTAAACATTTTGATGTGTACGCTATAAGTTAGATATATCTCTAACTTACTTAGATACAGGTCAATGAAGTTTATGGATAGTACTTTTTTTGTAACTAGATTTGATTGATTCAGGTGATGTGAATTAAGTATTGAAAATT  >  USA300TCH1516_ALE/1089862‑1090013            |                                                                                                                                             aaaGTACTATCTATTAAACATTTTGATGTGTACGCTATAAGTTAGATATATCTCTAACTTACTTAGATACAGGTCAATGAAGTTTATGGATAGTACTTTTTTTGTAACTAGATTTGATTGATTCAGGTGATGTGAATTAAg             >  1:24355/1‑141 (MQ=255)            tatTAAACATTTTGATGTGTACGCTATAAGTTAGATATATCTCTAACTTACTTAGATACAGGTCAATGAAGTTTATGGATAGTACTTTTTTTGTAACTAGATTTGATTGATTCAGGTGATGTGAATTAAGTATTGAAAAtt  >  1:18288/1‑141 (MQ=255)            |                                                                                                                                             AAAGTACTATCTATTAAACATTTTGATGTGTACGCTATAAGTTAGATATATCTCTAACTTACTTAGATACAGGTCAATGAAGTTTATGGATAGTACTTTTTTTGTAACTAGATTTGATTGATTCAGGTGATGTGAATTAAGTATTGAAAATT  >  USA300TCH1516_ALE/1089862‑1090013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑