Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1094919	1095043	125	2 [1]	[1] 2	ythA	Putative cytochrome bd menaquinol oxidase subunit I

ATACACATTATAGCAATTATAATTAAGTTCATTGTGTTGTCATCAAAAAAAGAAAAAGGTGATGTTTTTAAATGGATACAGTTGAAATCAGTCGGTTTTTGACAGCTATGACTTTAGCAGTTCATATCATTTTTGCAACGAT  >  USA300TCH1516_ALE/1094778‑1094919                                                                                                                                             |  aTACACATTATAGCAATTATAATTAAGTTCATTGTGATGTAATAAAAAAAAGAAAAAGGTGATGTTTTTAAATGGATACAGTTGAAATCAGTCGGTTTTTGACAGCTATGACTTTAGCAGTTCATATCATTTTTGCAACGa   <  2:41197/141‑1 (MQ=255)  tattaaTTATAATAATTATAATTAACTTCTTTGTGAAGGTAGAAAAAAAACAAAAAGGTGATGTTTTTAACTGTATACATTTCAAATCAGTCGGTTTTTGACAGCTTTGTATTTAGCAGTTCATATCATTTTTGCAACCAt  <  2:1353/136‑1 (MQ=255)                                                                                                                                             |  ATACACATTATAGCAATTATAATTAAGTTCATTGTGTTGTCATCAAAAAAAGAAAAAGGTGATGTTTTTAAATGGATACAGTTGAAATCAGTCGGTTTTTGACAGCTATGACTTTAGCAGTTCATATCATTTTTGCAACGAT  >  USA300TCH1516_ALE/1094778‑1094919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑