Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1094919	1095043	125	2 [1]	[1] 2	ythA	Putative cytochrome bd menaquinol oxidase subunit I

AAGCTTATACAATTACTGTAGCAGTGGGAGTTGTTACAGGTACAATTATAGGACTTCAATTATCATTGATTTGGCCTACATTTATGGAAATGGGTGGACACGTTATTGCACTTCCATTATTTATGGAAACATTTGCGTTCTTCTTTGAAGCTATTTTCTTAAGTATATAT  >  USA300TCH1516_ALE/1095015‑1095184                              |                                                                                                                                             aaGCTTATACAATTACTGTAGCAGTGGGAGTTGTTACAGGTACAATTATAGGACTTCAATTATCATTGATTTGGCCTACATTTATGGAAATGGGTGGACACGTTATTGCACTTCCATTATTTATGGAAACATTTGCGttct                               >  2:8877/1‑141 (MQ=255)                              gttgttACAGGTACAATTATAGGACTTCAATTATCATTGATTTGGCCTACATTTATGGAAATGGGTGGACACGTTATTGCACTTCCATTATTTATGGAAACATTTGCGTTCTTCGTTGAAGCTATTTTCTTAAGTatatat  >  2:51394/1‑141 (MQ=255)                              |                                                                                                                                             AAGCTTATACAATTACTGTAGCAGTGGGAGTTGTTACAGGTACAATTATAGGACTTCAATTATCATTGATTTGGCCTACATTTATGGAAATGGGTGGACACGTTATTGCACTTCCATTATTTATGGAAACATTTGCGTTCTTCTTTGAAGCTATTTTCTTAAGTATATAT  >  USA300TCH1516_ALE/1095015‑1095184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑