Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1103292	1103322	31	2 [1]	[1] 2	pdhA	Pyruvate dehydrogenase E1 component subunit alpha

GCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTC  >  USA300TCH1516_ALE/1103151‑1103295                                                                                                                                             |     gCAATTGCTGTAGGAATTCCTGGTATCCAAGTTGATGGTATGGAGGCGGTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGCTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGt      >  2:28123/1‑141 (MQ=255)     ttGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTc  >  1:23586/1‑141 (MQ=255)                                                                                                                                             |     GCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTC  >  USA300TCH1516_ALE/1103151‑1103295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑