Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1114592	1114634	43	2 [1]	[1] 2	mntH_1	Divalent metal cation transporter MntH

TGGTATGTGTAATCTTAAAAATCCTTCCATTACAATTTGTCCTGCTAAAGTACCAGTAATCGTTGAATTTTGACCTGACGCTAATAATGCAACTGCAAATAATGTACTCATGATTGCACCCATTGTTGCACCTAGTACAGGTTCAGTTTTTAAGGCGTG  >  USA300TCH1516_ALE/1114453‑1114611                                                                                                                                           |                     gggTATGTGTAATCATAAAAATCCTTCCATTACAATTTGTCCTGCTAAAGTACCAGTAATCGTTGAATTTTGACCTGACGCTAATAATGCAACTGCAAATAATGTACTCATGATTGCACCCATTGTTTCACCTAGTACatg                    <  2:22319/140‑3 (MQ=255)                   aaaTCCTNCCATTACAATTTGTCCTGCTAAAGTACCAGTAATCGTTGAATTTTGACCTGACGCTAATAATGCAACTGCAAATAATGTACTCATGATTGCACCCATTGTTGCACCTAGTACAGGTTCAGTTTTTAAGGCGTg  <  2:48657/141‑1 (MQ=255)                                                                                                                                           |                     TGGTATGTGTAATCTTAAAAATCCTTCCATTACAATTTGTCCTGCTAAAGTACCAGTAATCGTTGAATTTTGACCTGACGCTAATAATGCAACTGCAAATAATGTACTCATGATTGCACCCATTGTTGCACCTAGTACAGGTTCAGTTTTTAAGGCGTG  >  USA300TCH1516_ALE/1114453‑1114611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑