Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1133343	1133473	131	2 [1]	[1] 2	rsmD	Ribosomal RNA small subunit methyltransferase D

GTAAAAGTTATTAAATCAAATCTTGCGAATTTGGATTTAGAGGCACAATCTGAAGTTTATAAAAATAATGCAGATAGAGCTTTAAAAGCATTGTCAAAACGTGATATTCAATTTGATGTCATTTTCTTAGATCCACCTTATAATAAAGGTCTCATTGATAAAGCTTTAAAACTAATTTCAGAGTTTAATTTATTGAAAGAAAATGGTATCATCGTTTGTGAATTTAGCAATCATGAAGAAAT  >  USA300TCH1516_ALE/1133202‑1133443                                                                                                                                             |                                                                                                      gTAAAAGTTATTAAATCAAATCTTGCGAATTTGGATTTAGAGGCACAATCTGAAGTTTATAAAAATAATGCAGATAGAGCTTTAAAAGCATTGTCAAAACGTGATATTCAATTTGATGTCATTTTCTTAGATCCACCTtat                                                                                                       <  2:14445/141‑1 (MQ=255)                                                                                                      tGATATTCAATTTGATGTCATTTTCTTAGATCCACCTTATAATAAAGGTCTCATTGATAAAGCTTTAAAACTAATTTCAGAGTTTAATTTATTGAAAGAAAATGGTATCATCGTTTGTGAATTTAGCAATCATGAAGaaaa  >  2:13655/1‑140 (MQ=255)                                                                                                                                             |                                                                                                      GTAAAAGTTATTAAATCAAATCTTGCGAATTTGGATTTAGAGGCACAATCTGAAGTTTATAAAAATAATGCAGATAGAGCTTTAAAAGCATTGTCAAAACGTGATATTCAATTTGATGTCATTTTCTTAGATCCACCTTATAATAAAGGTCTCATTGATAAAGCTTTAAAACTAATTTCAGAGTTTAATTTATTGAAAGAAAATGGTATCATCGTTTGTGAATTTAGCAATCATGAAGAAAT  >  USA300TCH1516_ALE/1133202‑1133443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑