Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1133343	1133473	131	2 [1]	[1] 2	rsmD	Ribosomal RNA small subunit methyltransferase D

TTATCAACCGTTTAATATGATTAAACGTTACCATTATGGGTTGACAGACACATTGTTATTAGAAAAGGGAGAATAGCATGGAACATACAATAGCGGTCATTCCGGGTAGTTTTGACCCCATTACTTATGGTCATTTAGACATTATTGAGAGAAGTACAGATAGATTTG  >  USA300TCH1516_ALE/1133447‑1133614                            |                                                                                                                                             ttATCAACCGTTTAATATGATTAAACGTTACCATTATGGGTTGACAGACACATTGTTATTAGAAAAGGGAGAATAGCATGGAACATACAATAGCGGTCATTCCGGGTAGTTTTGACCCCATTACTTATGGTCATTTAGACa                             <  2:19742/141‑1 (MQ=255)                            ttACCATTATGGGTTGACAGACACATTGTTATTAGAAAAGGGAGAATAGCATGGAACATACAATAGCGGTCATTCCGGGTAGTTTTGACCCCATTACTTATGGTCATTTAGACATTATTGAGAGAAGTACAGATAGATTtg  <  1:13655/141‑1 (MQ=255)                            |                                                                                                                                             TTATCAACCGTTTAATATGATTAAACGTTACCATTATGGGTTGACAGACACATTGTTATTAGAAAAGGGAGAATAGCATGGAACATACAATAGCGGTCATTCCGGGTAGTTTTGACCCCATTACTTATGGTCATTTAGACATTATTGAGAGAAGTACAGATAGATTTG  >  USA300TCH1516_ALE/1133447‑1133614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑