Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1138018	1138091	74	2 [1]	[0] 2	isdB	Iron‑regulated surface determinant protein B

TTGTTAGTGGCTTTTGCTGCTGGTTTAACTTCTTTTGTTTCCTTAGGGGCTTTAACTTCTTTAACTTCTTTAGCTTCTTTTGTTTCAGAAGTAGGGGCCTCAACTTCTTTATTAGATACTGAGACAGCATTAGCTACTGGTTTAGTTTCTGGAGCTT  >  USA300TCH1516_ALE/1137877‑1138033                                                                                                                                             |                 ttGTTAGTGGCTTTTGCTGCTGGTTTAACTTCTTTTGTTTCCTTAGGGGCTTTAACTTCTTTAACTTCTTTAGCTTCTTTTGTTTCAGAAGTAGGGGCCTCAACTTCTTTATTAGATACTGAGACAGCATTAGCTACTGGt                  <  2:39810/141‑1 (MQ=255)                 ctgctgGTTTAACTTCTTTTGTTTCCTTAGGGGCTTTAACTTCTTTAACTTCTTTAGCTTCTTTTGTTTCAGAAGTAGGGGCCTCAACTTCTTTATTAGATACTGAGACAGCATTAGCTACTGGTTTAGTTTCTGGAGCtt  >  1:62293/1‑141 (MQ=255)                                                                                                                                             |                 TTGTTAGTGGCTTTTGCTGCTGGTTTAACTTCTTTTGTTTCCTTAGGGGCTTTAACTTCTTTAACTTCTTTAGCTTCTTTTGTTTCAGAAGTAGGGGCCTCAACTTCTTTATTAGATACTGAGACAGCATTAGCTACTGGTTTAGTTTCTGGAGCTT  >  USA300TCH1516_ALE/1137877‑1138033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑