Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1138018	1138091	74	2 [1]	[0] 2	isdB	Iron‑regulated surface determinant protein B

TGTACCACCTGTTTCTTCAGCTGCTGCTTGTGCTTCGCCATTTGACATTAATAATAAAAGTGTACTAATTGCTACAGATGCAACGCCTAGTGATGACTTTCTAATTGAATAAAATGATTTAAATTCTTTTTGCTGTTTGTT  >  USA300TCH1516_ALE/1138092‑1138232 |                                                                                                                                             tGTACCACCTGTTTCTTCAGCTGCTGCTTGTGCTTCGCCATTTGACATTAATAATAAAAGTGTACTAATTGCTACAGATGCAACGCCTAGTGATGACTTTCTAATTGAATAAAATGATTTAAATTCTTTTTGCtgtttgtt  <  2:61363/141‑1 (MQ=255) tGTACCACCTGTTTCTTCAGCTGCTGCTTGTGCTTCGCCATTTGACATTAATAATAAAAGTGTACTAATTGCTACAGATGCAACGCCTAGTGATGACTTTCTAATTGAATAAAATGATTTAAATTCTTTTTGCtgtttgtt  <  2:62293/141‑1 (MQ=255) |                                                                                                                                             TGTACCACCTGTTTCTTCAGCTGCTGCTTGTGCTTCGCCATTTGACATTAATAATAAAAGTGTACTAATTGCTACAGATGCAACGCCTAGTGATGACTTTCTAATTGAATAAAATGATTTAAATTCTTTTTGCTGTTTGTT  >  USA300TCH1516_ALE/1138092‑1138232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑