Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1168111	1168139	29	3 [1]	[1] 2	scn_2	Staphylococcal complement inhibitor

GAATGTATATGCATTAGCTGCAGGAAGCTTAAATCCATATTATAAACGTACGATTATGATGAATGAATATAGAGCTAAAGCGGCACTTAAGAAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAA  >  USA300TCH1516_ALE/1167970‑1168117                                                                                                                                             |        gAATGTATATGCATTAGCTGCAGGAAGCTTAAATCCATATTATAAACGTACGATTATGATGAATGAATATAGAGCTAAAGCGGCACTTAAGAAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAat         <  1:57568/141‑1 (MQ=255) gAATGTATATGCATTAGCTGCAGGAAGCTTAAATCCATATTATAAACGTACGATTATGATGAATGAATATAGAGCTAAAGCGGCACTTAAGAAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAat         <  1:57569/141‑1 (MQ=255)        tatGCATTAGCTGCAGGAAGCTTAAATCCATATTATAAACGTACGATTATGATGAATGAATATAGAGCTAAAGCGGCACTTAAGAAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACaaa  >  2:15615/1‑141 (MQ=255)                                                                                                                                             |        GAATGTATATGCATTAGCTGCAGGAAGCTTAAATCCATATTATAAACGTACGATTATGATGAATGAATATAGAGCTAAAGCGGCACTTAAGAAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAA  >  USA300TCH1516_ALE/1167970‑1168117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑