Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1168111	1168139	29	3 [1]	[1] 2	scn_2	Staphylococcal complement inhibitor

AAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACAAATATAAATACAATAGTTC  >  USA300TCH1516_ALE/1168119‑1168280                      |                                                                                                                                             aaaTTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGgaga                       <  2:19962/141‑1 (MQ=255)                      gATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACAAATATAAATACAATAGTTc  <  1:15615/141‑1 (MQ=255)                      |                                                                                                                                             AAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACAAATATAAATACAATAGTTC  >  USA300TCH1516_ALE/1168119‑1168280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑