Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1172037	1172082	46	2 [0]	[1] 2	USA300HOU_RS05830	hypothetical protein

TTATGAATCTTATTGAAATTTGATTAATAAAAATATGATAGGGGATTAAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGAAATGAAATCATCCATACACTGACTGTTTTAATAACA  >  USA300TCH1516_ALE/1171896‑1172038                                                                                                                                             |   ttATGAATCTTATTGAAATTTGATTAATAAAAATATGATAGGGGATTAAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGAAATGAAATCATCCATACACTGACTGTTTtaataa    <  2:63563/141‑1 (MQ=255)   aTGAATCTTATTGAAATTTGATTAATAAAAATATGATAGGGGATTAAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGAAATGAAATCATCCATACACTGACTGTTTtaataaaa  >  2:63256/1‑139 (MQ=255)                                                                                                                                             |   TTATGAATCTTATTGAAATTTGATTAATAAAAATATGATAGGGGATTAAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGAAATGAAATCATCCATACACTGACTGTTTTAATAACA  >  USA300TCH1516_ALE/1171896‑1172038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑