Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1172037	1172082	46	2 [0]	[1] 2	USA300HOU_RS05830	hypothetical protein

ATTCAAGAAAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGAGTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGATTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTA  >  USA300TCH1516_ALE/1172055‑1172223                             |                                                                                                                                             aTTCAAGAAAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGAGTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGATTTAAGAAATggg                              >  1:14804/1‑141 (MQ=255)                             agTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGAGTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGATTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTa  >  2:50938/1‑141 (MQ=255)                             |                                                                                                                                             ATTCAAGAAAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGAGTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGATTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTA  >  USA300TCH1516_ALE/1172055‑1172223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑