Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1192171	1192428	258	2 [1]	[1] 2	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase

TCGTTTATAAAGGTGTTCGTATTATTAACACTGAAGATCTAGTATTGCCTGGTGAACATAATTTAGAAAATATATTAGCAGCTGTGCTTGCTTGTATTTTAGCTGGTGTACCTATTAAAGCAATTATTGATAGTTTAACTACATTTTCAGGAATAGAGCATAGATTGCAATATGTTGGTACTA  >  USA300TCH1516_ALE/1192030‑1192212                                                                                                                                             |                                           tCGTTTAGAAAGGTGTTCGTATTATTAACACTGAAGATCTAGAATTGGCTGATGAACGTAATTTAGAAAATATATTAGCAGCTGCGCTTGCTTGTATTTTAGCTGGTGTACCTATTAAAGCGATTATTGAAGGTTTAACTa                                            <  2:18208/141‑1 (MQ=255)                                           tATTGCCTGGTGAACATAATTTAGAAAATATATTAGCAGCTGTGCTTGCTTGTATTTTAGCTGGTGTACCTATTAAAGCAATTATTGATAGTTTAACTACATTTTCAGGAATAGAGCATAGATTGCAATATGTTGGTACTa  >  2:42055/1‑141 (MQ=255)                                                                                                                                             |                                           TCGTTTATAAAGGTGTTCGTATTATTAACACTGAAGATCTAGTATTGCCTGGTGAACATAATTTAGAAAATATATTAGCAGCTGTGCTTGCTTGTATTTTAGCTGGTGTACCTATTAAAGCAATTATTGATAGTTTAACTACATTTTCAGGAATAGAGCATAGATTGCAATATGTTGGTACTA  >  USA300TCH1516_ALE/1192030‑1192212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑