Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1192171	1192428	258	2 [1]	[1] 2	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase

TGTTCGCGCGATGGTTGTATTCGGACAAACGAAAGCTAAGTTTGCTAAACTAGGTAATAGTCAAGGGAAATCGGTCATTGAAGCGAACAATGTCGAAGACGCTGTTGATAAAGTACAAGATATTATAGAACCAAATGATGTTGTATTATTGTCACCTGCTTGTGCGAGTTGGGATCAATATAGTACTTTTGAAGAGCGTGGAGAGA  >  USA300TCH1516_ALE/1192364‑1192569                                                                  |                                                                                                                                             tGTTCGCGCGATGGTTGTATTCGGACAAACGAAAGCTAAGTTTGCTAAACTATGTAATAGTCAAGGGAAATCGGTCATTGAAGCGAACAATGTCGAAGACGCTGTTGATAAAGTACAAGATATTATAGAACCAAATGAtgt                                                                   <  1:42055/141‑1 (MQ=255)                                                                  ggAAATCGGTCATTGAAGCGAACAATGTCGAAGACGCTGTTGATAAAGTACAAGATATTATAGAACCAAATGATGTTGTATTATTGTCACCTGCTTGTGCGAGTTGGGATCAATATAGTACTTTTGAAGAGCGTGgagaga  >  1:24731/1‑141 (MQ=255)                                                                  |                                                                                                                                             TGTTCGCGCGATGGTTGTATTCGGACAAACGAAAGCTAAGTTTGCTAAACTAGGTAATAGTCAAGGGAAATCGGTCATTGAAGCGAACAATGTCGAAGACGCTGTTGATAAAGTACAAGATATTATAGAACCAAATGATGTTGTATTATTGTCACCTGCTTGTGCGAGTTGGGATCAATATAGTACTTTTGAAGAGCGTGGAGAGA  >  USA300TCH1516_ALE/1192364‑1192569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑