Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1263802	1263930	129	2 [1]	[1] 2	lytN_1	putative cell wall hydrolase LytN

ATATTCAAAATACAAATAATATAGCAAATCCTAATTTAATATTTATTGGTCAAAAATTAAAAGTGCCAATGACACCATTAGTAGAACCAAAACCAAAAACAGTGTCTTCAAATAATAAAAGTAATAGTAATAGCAGTACATTAAATTATTTGAAAACATTAGAGAATAGAGGATGGGATTTCGACGGTAGTTATGGATGGCAATGTTTCGATTTAGTTAA  >  USA300TCH1516_ALE/1263661‑1263880                                                                                                                                             |                                                                                atatTCAAAATACAAATAATATAGCAAATCCTAATTTAATATTTATTGGTCAAAAATTAAAAGTGCCAATGACACCATTAGTAGAACCAAAACCAAAAACAGTGTCTTCAAATAATAAAAGTAATAGTAATAGCAGTACAt                                                                                 <  1:15145/141‑1 (MQ=255)                                                                                agtagAACCAAAACCAAAAACAGTGTCTTCAAATAATAAAAGTAAAAGTAATAGCAGTACATTAAATTATTTGAAAACATTAGAGAATAGAGGATGGGATTTCGACGGTAGTTATGGATGGCAATGTTTCGATTTAGTTaa  >  2:38729/1‑141 (MQ=255)                                                                                                                                             |                                                                                ATATTCAAAATACAAATAATATAGCAAATCCTAATTTAATATTTATTGGTCAAAAATTAAAAGTGCCAATGACACCATTAGTAGAACCAAAACCAAAAACAGTGTCTTCAAATAATAAAAGTAATAGTAATAGCAGTACATTAAATTATTTGAAAACATTAGAGAATAGAGGATGGGATTTCGACGGTAGTTATGGATGGCAATGTTTCGATTTAGTTAA  >  USA300TCH1516_ALE/1263661‑1263880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑