Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1263802	1263930	129	2 [1]	[1] 2	lytN_1	putative cell wall hydrolase LytN

AAAGGATATGGAGCTAAAGATATACCATATGCAAATAATTTTAATAGTGAAGCTAAAATTTATCACAACACACCAACTTTCAAAGCTGAACCTGGGGACTTAGTGGTTTTTAGTGGAAGATTTGGTGGAGGATATGGTCATACAGCTATTGTCTTAA  >  USA300TCH1516_ALE/1263915‑1264071                 |                                                                                                                                             aaaGGATATGGAGCTAAAGATATAACATATGCAAATAATTTTAATAGTGAAGCTAAAACTTAACACAACCCACCAACTTTCAAAGCTGATCCTGGGGACTTAGTGGTTTTTAGTGGAAGATTTGGTGGAGGATATGGTCAt                  <  1:38729/141‑1 (MQ=255)                 aaGATATACCATATGCAAATAATTTTAATAGTGAAGCTAAAATTTATCACAACACACCAACTTTCAAAGCTGAACCTGGGGACTTAGTGGTTTTTAGTGGAAGATTTGGTGGAGGATATGGTCATACAGCTATTGTCTTaa  <  2:26374/141‑1 (MQ=255)                 |                                                                                                                                             AAAGGATATGGAGCTAAAGATATACCATATGCAAATAATTTTAATAGTGAAGCTAAAATTTATCACAACACACCAACTTTCAAAGCTGAACCTGGGGACTTAGTGGTTTTTAGTGGAAGATTTGGTGGAGGATATGGTCATACAGCTATTGTCTTAA  >  USA300TCH1516_ALE/1263915‑1264071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑