Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1271469	1271512	44	2 [1]	[1] 2	xerC_1	Tyrosine recombinase XerC

TTTAAATGATATTGTTAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTG  >  USA300TCH1516_ALE/1271328‑1271476                                                                                                                                             |         tttAAATGATATTGTTAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTc          <  2:56348/141‑1 (MQ=255)         atatTGTTAAACGAACAGCAGGCGTAAGTGAGCTTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATCGAATCAAGGCGCAGACCGAAGAACAGTACAATCGCTATTAGGTCATGTTCATTTGTCAACAACTg  >  2:27275/1‑141 (MQ=255)                                                                                                                                             |         TTTAAATGATATTGTTAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTG  >  USA300TCH1516_ALE/1271328‑1271476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑