Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1271469	1271512	44	2 [1]	[1] 2	xerC_1	Tyrosine recombinase XerC

ATACACACGTATCTAACCAACAATTAAGAAAAGTGTATCTAAATGCACATCCTCGAGCGAAAAAGGAGAATGAAACATGAGTAATACAACATTACATGCAACAACAATTTATGCTGTAAGACATAATGGGAAAGCAGCTATGGCTGGAGATGGGCAAGTAACGCTTGGTCA  >  USA300TCH1516_ALE/1271483‑1271653                               |                                                                                                                                             ataCACACGTAACAAACCAACAATTAAGAAAAGTGTATCTAAATGAACAAAAAAAAAAAAAAAAGGAGAATGAAACATGAGTAATACAACATTACATGCAACAACAATTTATGCTGTAAGACATAATGGGAAAGCAGCTAt                                <  2:56813/141‑1 (MQ=255)                               aaGTGTATCTAAATGCACATCCTCGAGCGAAAAAGGAGAATGAAACATGAGTAATACAACATTACATGCAACAACAATTTATGCTGTAAGACATAATGGGAAAGCAGCTATGGCTGGAGATGGGCAAGTAACGCTTGGTca  >  2:34486/1‑141 (MQ=255)                               |                                                                                                                                             ATACACACGTATCTAACCAACAATTAAGAAAAGTGTATCTAAATGCACATCCTCGAGCGAAAAAGGAGAATGAAACATGAGTAATACAACATTACATGCAACAACAATTTATGCTGTAAGACATAATGGGAAAGCAGCTATGGCTGGAGATGGGCAAGTAACGCTTGGTCA  >  USA300TCH1516_ALE/1271483‑1271653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑