Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1319266	1319303	38	2 [1]	[1] 2	miaB	tRNA‑2‑methylthio‑N(6)‑dimethylallyladenosine synthase

ATGTCAAAAAGGAACGATTGCAACGTTTGAATAAAAAAGTTGGTCATTATTCACAAATAGCTATGAGTAAGTACGAAGGACAAACTGTAACAGTACTTTGTGAAGGAAGTAGTAAAAAAGATGATCAGGTTCTTGCTGGCTACACTGATAAAAA  >  USA300TCH1516_ALE/1319125‑1319278                                                                                                                                             |              aTGTCAAAAAGGAACGATTGCAACGTTTGAATAAAAAAGTTGGTCATTATTCACAAATAGCTATGAGTAAGTACGAAGGACAAACTGTAACAGTACTTTGTGAAGGAAGTAGTAAAAAAGATGATCAGGTTCTTGCTGGCt               >  1:4517/1‑141 (MQ=255)              aCGATTGCAACGTTTGAATAAAAAAGGTGGTCATTATTCACAAATAGCTATTAGTAAGTACGAAAGACAAACTGTAACAGTACTTTCTGAAGGAAGTAGTAAAAAAGATGATCAGGTTCTTGCTGGCTACACTGATaaaaa  <  1:47455/141‑1 (MQ=255)                                                                                                                                             |              ATGTCAAAAAGGAACGATTGCAACGTTTGAATAAAAAAGTTGGTCATTATTCACAAATAGCTATGAGTAAGTACGAAGGACAAACTGTAACAGTACTTTGTGAAGGAAGTAGTAAAAAAGATGATCAGGTTCTTGCTGGCTACACTGATAAAAA  >  USA300TCH1516_ALE/1319125‑1319278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑