Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1319266	1319303	38	2 [1]	[1] 2	miaB	tRNA‑2‑methylthio‑N(6)‑dimethylallyladenosine synthase

GTTAATTTCAAAGCGCCTAAAGAAATGATTGGTAAACTAGTGGAAGTACGAATAGATGAAGCTAAACAGTATTCATTAAATGGCAGTTTTATAAAGGAAGTAGAGCCGGAAATGGTGATTCAATAAATGTATAATAAAGATGACGTGTTGAACCAAGCG  >  USA300TCH1516_ALE/1319286‑1319444                   |                                                                                                                                             gTTAATTTCAAAGCGCCTAAAGAAATGATTGGTAAACTAGTGGAAGTACGAATAGATGAAGCTAAACAGTATTCATTAAATGGCAGTTTTATAAAGGAAGTAGAGCCGGAAATGGTGATTCAATAAATGTATAATAAAGAt                    <  2:54001/141‑1 (MQ=255)                   aaaGAAATGATTGGTAAACTAGTGGAAGTACGAATAGATGAAGCTAAACAGTATTCATTAAATGGCAGTTTTATAAAGGAAGTAGAGCCGGAAATGGTGATTCAATAAATGTATAATAAAGATGACGTGTTGAACCAAGCg  <  2:4517/141‑1 (MQ=255)                   |                                                                                                                                             GTTAATTTCAAAGCGCCTAAAGAAATGATTGGTAAACTAGTGGAAGTACGAATAGATGAAGCTAAACAGTATTCATTAAATGGCAGTTTTATAAAGGAAGTAGAGCCGGAAATGGTGATTCAATAAATGTATAATAAAGATGACGTGTTGAACCAAGCG  >  USA300TCH1516_ALE/1319286‑1319444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑