Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1346251	1346302	52	2 [1]	[1] 2	USA300HOU_RS06685/ltaE	hypothetical protein/Low specificity L‑threonine aldolase

GTCGTCAAATTAAAGTAAATACAGCACAAATTAACATTTTTAAATATATAAAATAAAACAAGATACTCAATAATCTGTAGTACCTTGTTTTGGAATAATGTAATTTTATATCATCAACGGCTACAAATGAGCAGTTTCATAT  >  USA300TCH1516_ALE/1346110‑1346251                                                                                                                                             |  gtcgtcAAATTAAAGTAAATACAGCACAAATTAACATTTTTAAATATATAAAATAAAACAAGATACTCAATAATCTGTAGTACCTTGTTTTGGAATAATGTAATTTTATATCATCAACGGCTACAAATGAGCAGTTTCata   >  1:21817/1‑141 (MQ=255)  tcgtcAAATTAAAGTAAATACAGCACAAATTAACATTTTTAAATATATAAAATAAAACAAGATACTCAATAATCTGTAGTACCTTGTTTTGGAATAATGTAATTTTATATCATCAACGGCTACAAATGAGCAGTTTCatat  >  1:49383/1‑141 (MQ=255)                                                                                                                                             |  GTCGTCAAATTAAAGTAAATACAGCACAAATTAACATTTTTAAATATATAAAATAAAACAAGATACTCAATAATCTGTAGTACCTTGTTTTGGAATAATGTAATTTTATATCATCAACGGCTACAAATGAGCAGTTTCATAT  >  USA300TCH1516_ALE/1346110‑1346251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑