Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1346251	1346302	52	2 [1]	[1] 2	USA300HOU_RS06685/ltaE	hypothetical protein/Low specificity L‑threonine aldolase

AATTAATAAATGATTTACCAGATGACATATAACAGCATTATTAGATTAATTCTAATAGTTTATTTAAATTTTCTTCAGTTGTCGCCCAACTGGTTGCGAATCTAACAACACGATGTTGATCATCGTATTTTTCCCAAACAGCAAATTTAACTTTTTGT  >  USA300TCH1516_ALE/1346286‑1346443                  |                                                                                                                                             aattaatAAATGATTTACCAGATGACATATAACAGCATTATTAGATTAATTCTAATAGGTTATGTAAAATTGCTGCAGTTGGCTCCCAACTGGTTGCGAATCTAACAACACGATGTTGATCATCGTATTTTTCCCAAACAg                   >  1:6158/1‑141 (MQ=255)                  ccAGATGACATATAACAGCATTATTAGATTAATTCTAATAGTTTATTTAAATTTTCTTCAGTTGTCGCCCAACTGGTTGCGAATCTAACAACACGATGTTGATCATCGTATTTTTCCCAAACAGCAAATTTAACTTTTTGt  >  1:48792/1‑141 (MQ=255)                  |                                                                                                                                             AATTAATAAATGATTTACCAGATGACATATAACAGCATTATTAGATTAATTCTAATAGTTTATTTAAATTTTCTTCAGTTGTCGCCCAACTGGTTGCGAATCTAACAACACGATGTTGATCATCGTATTTTTCCCAAACAGCAAATTTAACTTTTTGT  >  USA300TCH1516_ALE/1346286‑1346443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑