Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1367463 1367636 174 2 [1] [1] 2 [guaC] [guaC]

AACAGTATAAAGAATATTTTGGTAGTGCATCTGAATTTCAAAAAGGCGAACATAAAAATGTAGAAGGTAAAAAAATGTTTGTAGAACATAAGGGTTCATTAATGGATACCTTAAAAGAAATGCAACAAGATTTACAAAGCTCAATTTCATATGCCGGTGGAAAAGACTTGAAATCATTACGTACTGTAGATTATGTTATTGTTAGAAACTCTATTTTCAACGGTGATAGAGATTAATATTTATAGTAGGTGAT  >  USA300TCH1516_ALE/1367323‑1367575
                                                                                                                                            |                                                                                                                 
aaCAGTATAAAGAATATTTGGGTAGTGCATCTGAATTTAAAAAAGGCGAACATAAAAATGTAGAAGGTAAAAAAAATGTTTGTAGAACATAAGGGTTCATTAATGGATACCTTAAAAGAAATGCAACAAGATTTACAAAGc                                                                                                                   <  2:45585/141‑1 (MQ=255)
                                                                                                                 aaaaGAAATGCAACAAGATTTACAAAGCTCAATTTCATATGCCGGTGGAAAAGACTTGAAATCATTACGTACTGTAGATTATGTTATTGTTAGAAACTCTATTTTCAACGGTGATAGAGATTAATATTTATAGTAGGTGAt  >  1:49081/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                 
AACAGTATAAAGAATATTTTGGTAGTGCATCTGAATTTCAAAAAGGCGAACATAAAAATGTAGAAGGTAAAAAAATGTTTGTAGAACATAAGGGTTCATTAATGGATACCTTAAAAGAAATGCAACAAGATTTACAAAGCTCAATTTCATATGCCGGTGGAAAAGACTTGAAATCATTACGTACTGTAGATTATGTTATTGTTAGAAACTCTATTTTCAACGGTGATAGAGATTAATATTTATAGTAGGTGAT  >  USA300TCH1516_ALE/1367323‑1367575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: