Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1367463	1367636	174	2 [1]	[1] 2	[guaC]	[guaC]

GTTGTTGCGTTTTTATCAATTATTATCATTGCGCCAATAACAGAATTTAAACCATTCATTCATTTACAAAATGAAGTAAGACAATATATTGACATTCACATCAATAAAGAAACAATTTCTGCGGAAAATAAATTGGATACACCGAAGAAACAACAATTTGCCTTTAATAATATACAA  >  USA300TCH1516_ALE/1367601‑1367777                                     |                                                                                                                                             gttgttGCGTTTTTATCAATTATTATCATTGCGCCAATAACAGAATTTAAACCATTCATTCATTTACAAAATGAAGTAAGACAATATATTGACATTCACATCAATAAAGAAACAATTTCTGCGGAAAATAAATTGGATaca                                      >  2:31204/1‑141 (MQ=255)                                     aTAACAGAATTTAAACCATTCATTCATTTACAAAATGAAGTAAGACAATATATTGACATTCACATCAATAAAGAAACAATTTCTGCGGAAAATAAATTGGATACACCGAAGAAACAACAATTTGCCTTTAATAATATACaa  >  2:35699/1‑141 (MQ=255)                                     |                                                                                                                                             GTTGTTGCGTTTTTATCAATTATTATCATTGCGCCAATAACAGAATTTAAACCATTCATTCATTTACAAAATGAAGTAAGACAATATATTGACATTCACATCAATAAAGAAACAATTTCTGCGGAAAATAAATTGGATACACCGAAGAAACAACAATTTGCCTTTAATAATATACAA  >  USA300TCH1516_ALE/1367601‑1367777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑