Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1369061	1369118	58	2 [1]	[1] 3	lexA_1	LexA repressor

AAAATTTATAAAAATGAGGGCTTAACAATTACGATAATATATAACGGTTTAAAATATTACATTTCGCGGTACAAACCAATTACTTTCCCAATTACAGCAACATTGTCTAGGTAAATTGGCTCCATTGTACTATTTTCAGGTTGTAATCGATAACGATTTTTTTCTTTA  >  USA300TCH1516_ALE/1368920‑1369087                                                                                                                                             |                            aaaaTTTATAAAAATGAGGGCTTAACAATTACGATAATATATAACGGTTTAAAATATTACATTTCGCGGTACAAACCAATTACTTTCCCAATTACAGCAACATTGTCTAGGTAAATTGGCTCCATTGTACTATTTTCAGGt                             <  1:4307/141‑1 (MQ=255)                            aTTACGATAAGATATAACGGTTTAAAATATTACACTTCGCGGTACAAACGAATTACGCGCCCGAGTACGGCAACATTGTCTAGGTAAATTGGCTCCATTGTACTATTTTCAGGTTGTAATCGATAACGATTTTTTTCTTta  <  1:32362/141‑1 (MQ=255)                                                                                                                                             |                            AAAATTTATAAAAATGAGGGCTTAACAATTACGATAATATATAACGGTTTAAAATATTACATTTCGCGGTACAAACCAATTACTTTCCCAATTACAGCAACATTGTCTAGGTAAATTGGCTCCATTGTACTATTTTCAGGTTGTAATCGATAACGATTTTTTTCTTTA  >  USA300TCH1516_ALE/1368920‑1369087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑