Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1369061	1369118	58	2 [1]	[1] 3	lexA_1	LexA repressor

ATCTTCCTCAGTCATAGCAACAATAATGTCTCCATTTTCTGCTATGGTTTGACTGCGAACAATTACTTTGTCTCCGTCTAATATACCAGCCTCAATCATACTGTCGCCTACGACGTTTAATATGAATATGTCGCTATTGTGTGTCGATG  >  USA300TCH1516_ALE/1369111‑1369259         |                                                                                                                                             aTCTTCCTCAGTCATAGCAACAATAATGTCTCCATTTTCTGCTATGGTTTGACTGCGAACAATTACTTTGTCTCCGTCTAATATACCAGCCTCAATCATACTGTCGCCTACGACGTTTAATATGAATATGTCGCTATtgtg          >  1:43006/1‑141 (MQ=255)         cAGTCATAGCAACAATAATGTCTCCATTTTCTGCTATGGTTTGACTGCGAACAATTACTTTGTCTCCGTCTAATATACCAGCCTCAATCATACTGTCGCCTACGACGTTTAATATGAATATGTCGCTATTGTGTGTCGATg  >  2:14584/1‑141 (MQ=255)         cAGTCATAGCAACAATAATGTCTCCATTTTCTGCTATGGTTTGACTGCGAACAATTACTTTGTCTCCGTCTAATATACCAGCCTCAATCATACTGTCGCCTACGACGTTTAATATGAATATGTCGCTATTGTGTGTCGATg  >  2:14592/1‑141 (MQ=255)         |                                                                                                                                             ATCTTCCTCAGTCATAGCAACAATAATGTCTCCATTTTCTGCTATGGTTTGACTGCGAACAATTACTTTGTCTCCGTCTAATATACCAGCCTCAATCATACTGTCGCCTACGACGTTTAATATGAATATGTCGCTATTGTGTGTCGATG  >  USA300TCH1516_ALE/1369111‑1369259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑