Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1383000	1383109	110	2 [1]	[1] 3	acnA	Aconitate hydratase A

TATTTGGCCATCAATTAAAGAAGTTTCAGATACCGTTGATAGTGTTGTAACACCTGAATTATTTATTGAAGAATATAATAACGTATACAATAACAACGAATTATGGAATGAGATTGATGTAACTGATCAACCTCTATATGACTTTGATCCTAATTCAACATACATTCAAAATCCATCATTCTTCCAAGGATTAT  >  USA300TCH1516_ALE/1382859‑1383052                                                                                                                                             |                                                      tatTTGGCCATCAATTAAAGAAGTTTCAGATACCGTTGATAGTGTTGTAACACCTGAATTATTTATTGAAGAATATAATAACGTATACAATAACAACGAATTATGGAATGAGATTGATGTAACTGATCAACCTCTATATGa                                                       <  1:31878/141‑1 (MQ=255)                                                      cTGAATTATTTATTGAAGAATATAATAACGTATACAATAACAACGAATTATGGAATGAGATTGATGTAACTGATCAACCTCTATATGACTTTGATCCTAATTCAACATACATTCAAAATCCATCATTCTTCCAAGGATTAt  <  1:13871/141‑1 (MQ=255)                                                                                                                                             |                                                      TATTTGGCCATCAATTAAAGAAGTTTCAGATACCGTTGATAGTGTTGTAACACCTGAATTATTTATTGAAGAATATAATAACGTATACAATAACAACGAATTATGGAATGAGATTGATGTAACTGATCAACCTCTATATGACTTTGATCCTAATTCAACATACATTCAAAATCCATCATTCTTCCAAGGATTAT  >  USA300TCH1516_ALE/1382859‑1383052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑