Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1383000	1383109	110	2 [1]	[1] 3	acnA	Aconitate hydratase A

GGTACGATTGTTCCATTAAATGGTTTACGTGTTATGGGTAAATTCGGTGATTCTGTGACAACTGACCACATCTCTCCAGCAGGTGCAATTGGTAAAGATACGCCAGCTGGTAAATATTTACAAGATCATCAAGTGCCTATTCG  >  USA300TCH1516_ALE/1383064‑1383206                                               |                                                                                                 ggTACGATTGTTCCATTAAATGGTTTACGTGTTATGGGTAAATTCGGTGATTCTGTGACAACTGACCACATCTCTCCAGCAGGTGCAATTGGTAAAGATACGCCAGCTGGTAAATATTTACAAGATCATCAAGTGCCTAtt    >  1:288/1‑141 (MQ=255)                                               gTGATTCTGTGACAACTGACCACATCTCTCCAGCAGGTGCAATTGGTAAAGATACGCCAGCTGGTAAATATTTACAAGATCATCAAGTGCCTATTCg  >  1:36403/1‑97 (MQ=255)                                               gTGATTCTGTGACAACTGACCACATCTCTCCAGCAGGTGCAATTGGTAAAGATACGCCAGCTGGTAAATATTTACAAGATCATCAAGTGCCTATTCg  <  2:36403/97‑1 (MQ=255)                                               |                                                                                                 GGTACGATTGTTCCATTAAATGGTTTACGTGTTATGGGTAAATTCGGTGATTCTGTGACAACTGACCACATCTCTCCAGCAGGTGCAATTGGTAAAGATACGCCAGCTGGTAAATATTTACAAGATCATCAAGTGCCTATTCG  >  USA300TCH1516_ALE/1383064‑1383206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑